Takes SeqRecordExpanded objects and creates datasets for phylogenetic software
Project description
tests |
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package |
Takes SeqRecordExpanded objects and creates datasets for phylogenetic software
Free software: BSD license
Installation
pip install dataset_creator
Usage
>>> from seqrecord_expanded import SeqRecord
>>> from dataset_creator import Dataset
>>>
>>> seq_record1 = SeqRecord('ACTACCTA')
>>> seq_record2 = SeqRecord('ACTACCTA')
>>>
>>> seq_records = [
... seq_record1, seq_record2,
... ]
>>> dataset = Dataset(seq_records, format='NEXUS', partitioning='by gene')
>>> print(dataset.str)
"""#NEXUS
blah blah
"""
Development
To run the all tests run:
tox
Changelog
0.0.0 (2015-06-10)
First release on PyPI.
Project details
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