Provide classes for DBnomics entities and a storage abstraction
Project description
DBnomics Data Model
In DBnomics, once data has been downloaded from providers, it is converted in a common format: the DBnomics data model.
This Python package provides:
- model classes defining DBnomics entities (provider, dataset, series, etc.) with their business logic and validation rules
- a data storage abstraction to load and save those entities
- adapters implementing the data storage abstraction (e.g.
dbnomics_data_model.storage.adapters.filesystem
)
This package is used in particular by the convert script of fetchers in order to save data.
Documentation
Please read https://db.nomics.world/docs/data-model/
Validate data
To validate a directory containing data written by (or compatible with) the "filesystem" adapter:
dbnomics-validate-storage <storage_dir>
This script outputs the data validation errors it finds.
Run tests
To run unit tests:
pytest
Code quality:
flake8 .
See also: https://git.nomics.world/dbnomics-fetchers/documentation/wikis/code-style
Publish a new version
For package maintainers:
git tag x.y.z
git push
git push --tags
GitLab CI will publish the package to https://pypi.org/project/dbnomics-data-model/ (see .gitlab-ci.yml
).
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for dbnomics-data-model-0.13.27.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 7292ed136ae736e8ee1a00be277d91b43ef7d0f661c43f2af0eb4bb85a0879b1 |
|
MD5 | 8d996bcb8e734129a6bf4d51dd5e5219 |
|
BLAKE2b-256 | 303ad34fd267edc0c0cc15943ab5035f6ea04ece4f8d6fc964fcc6c850fb8c8b |
Hashes for dbnomics_data_model-0.13.27-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | d1f751245877afac2018321d75ee92f5f610677249ee8814ca09f3466b36c519 |
|
MD5 | f46e35c68d061c7053dd66d01e481077 |
|
BLAKE2b-256 | df2ca84d9adbfdd9f91f111d6266740fc81782b79486ca2044ca06ae566f003c |