Library for real-time deformability cytometry (RT-DC)
Project description
This is a Python library for the post-measurement analysis of real-time deformability cytometry (RT-DC) datasets; an essential part of Shape-Out.
Documentation
The documentation, including the code reference and examples, is available at dclab.readthedocs.io.
Installation
To install the latest release, simply run
pip install dclab # for a minimal install pip install dclab[tdms] # if you are also working with tdms files pip install dclab[export] # if you need avi and fcs export pip install dclab[all] # for all of the above
Information for developers
Contributing
The main branch for developing dclab is master. If you want to make small changes like one-liners, documentation, or default values in the configuration, you may work on the master branch. If you want to change more, please (fork dclab and) create a separate branch, e.g. my_new_feature_dev, and create a pull-request once you are done making your changes. Please make sure to edit the Changelog.
Very important: Please always try to use
git pull --rebase
instead of
git pull
to prevent confusions in the commit history.
Tests
dclab is tested using pytest. If you have the time, please write test methods for your code and put them in the tests directory.
Incrementing version
Dclab currently gets its version from the latest git tag. If you think that a new version should be published, create a tag on the master branch (if you have the necessary permissions to do so):
git tag -a "0.1.3" git push --tags origin
Appveyor and TravisCI will then automatically build source package and wheels and publish them on PyPI.
Notes on Shape-Out
The appveyor Shape-Out build is automatically triggered after each commit to the Shape-Out repository. At each build, the master branch of dclab is checked out and the Shape-Out installer is built with it. Therefore, it is not necessary to bump the version of dclab or to upload the latest version of dclab to PyPI in order to get your new code into Shape-Out.
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