ddgen 0.0.2

Library of Python utilities that I needed so many times

ddgen

Library of Python utilities that I needed so many times in the past

Select RefSeq transcript with the highest priority

RefSeq transcripts have following categories:

• NM_, XM_, NR_, XR_

If we have transcripts from multiple sources, we want to select the one coming from the source with highest priority.

E.g. NM_ has higher priority than XM_.

If we have multiple transcripts from a single source, we want to select the one with smaller integer.

E.g. NM_123.4 has higher priority than NM_124.4.

from ddgen.utils import txs

# tx will be `NM_123.4`
tx = txs.prioritize_refseq_transcripts(['NM_123.4', 'NM_124.4', 'XM_100.1'])