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Python client for OmicsDI Restful API

Project description

ddipy

An Python package to obtain data from the Omics Discovery Index (OmicsDI. It uses the RESTful Web Services at OmicsDI WS for that purpose.

Installation

we need to install ddipy:

pip install ddipy

Examples

This example shows how retrieve details of one dataset by using the Python package ddipy.

from ddipy.dataset_client import DatasetClient

if __name__ == '__main__':
   client = DatasetClient()
   res = client.get_dataset_details("pride", "PXD000210", False)
   print(res.text)

This example shows a search for all the datasets for human.

from ddipy.dataset_client import DatasetClient

if __name__ == '__main__':
   client = DatasetClient()
   res = client.search("human")
   print(res.text)

This example is a query to retrieve all the datasets that reported the UniProt protein P21399 as identified.

from ddipy.dataset_client import DatasetClient

if __name__ == '__main__':
    client = DatasetClient()
    res = client.search("UNIPROT:P21399")
    print(res.text)

This example is a query to find all the datasets where the gene ENSG00000147251 is reported as differentially expressed.

from ddipy.dataset_client import DatasetClient

if __name__ == '__main__':
    client = DatasetClient()
    res = client.search("ENSEMBL:ENSG00000147251")
    print(res.text)

The normal result of any client should be an original response from requests. when missing some of required parameters, the result shoud be like:

  {
     error: parameter is missing
  }

Find out about us in our GitHub profiles:

Yasset Perez-Riverol
Pan Xu

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