dds-cli 0.0.1.dev0

A command line tool to manage data and projects in the SciLifeLab Data Delivery System.

SciLifeLab Data Delivery System - Command line interface

A command line tool dds to manage data and projects in the SciLifeLab Data Delivery Service.

This will be used for data delivery within larger projects and/or projects resulting in the production of large amounts of data, for example next-generation sequencing data and imaging.

This tool is written and maintained by the SciLifeLab Data Centre.

Table of contents

• Installation
• Overview of commands

Installation

Python Package Index

:warning: Not available yet - coming soon after first release :warning:

The dds-cli package can be installed from PyPI using pip as follows:

pip install dds_cli

Development version

If you would like the latest development version of tools, the command is:

pip install --upgrade --force-reinstall git+https://github.com/ScilifelabDataCentre/dds_cli.git@dev

If you intend to make edits to the code, first make a fork of the repository and then clone it locally. Go to the cloned directory and install with pip (also installs development requirements):

pip install --upgrade -r requirements-dev.txt -e .

Overview of commands

Once installed you can use the command dds in a terminal session. This has the following subcommands:

• get - Download specified files from the cloud and restore the original format.
• ls - List the projects and the files within projects.
• put - Process and upload specified files to the cloud.
• rm - Delete files within a project.