ddsketch 1.1.2

Distributed quantile sketches

ddsketch

This repo contains the Python implementation of the distributed quantile sketch algorithm DDSketch [1]. DDSketch has relative-error guarantees for any quantile q in [0, 1]. That is if the true value of the qth-quantile is x then DDSketch returns a value y such that |x-y| / x < e where e is the relative error parameter. (The default here is set to 0.01.) DDSketch is also fully mergeable, meaning that multiple sketches from distributed systems can be combined in a central node.

Our default implementation, DDSketch, is guaranteed [1] to not grow too large in size for any data that can be described by a distribution whose tails are sub-exponential.

We also provide implementations (LogCollapsingLowestDenseDDSketch and LogCollapsingHighestDenseDDSketch) where the q-quantile will be accurate up to the specified relative error for q that is not too small (or large). Concretely, the q-quantile will be accurate up to the specified relative error as long as it belongs to one of the m bins kept by the sketch. If the data is time in seconds, the default of m = 2048 covers 80 microseconds to 1 year.

Installation

To install this package, run pip install ddsketch, or clone the repo and run python setup.py install. This package depends on numpy and protobuf. (The protobuf dependency can be removed if it's not applicable.)

Usage

from ddsketch import DDSketch

sketch = DDSketch()

Add values to the sketch

import numpy as np

values = np.random.normal(size=500)
for v in values:
  sketch.add(v)

Find the quantiles of values to within the relative error.

quantiles = [sketch.get_quantile_value(q) for q in [0.5, 0.75, 0.9, 1]]

Merge another DDSketch into sketch.

another_sketch = DDSketch()
other_values = np.random.normal(size=500)
for v in other_values:
  another_sketch.add(v)
sketch.merge(another_sketch)

The quantiles of values concatenated with other_values are still accurate to within the relative error.

References

[1] Charles Masson and Jee E Rim and Homin K. Lee. DDSketch: A fast and fully-mergeable quantile sketch with relative-error guarantees. PVLDB, 12(12): 2195-2205, 2019.