A tool for finding ultraconserved elements across multiple genomes
Project description
# dedUCE
dedUCE is a tool for efficiently finding ultra-conserved elements across multiple genomes.
## Development tasks
It’s recommended to set up a virtual environment to prevent installed dependencies polluting your global Python installation.
You can do this using:
`shell script python3 -m venv env source env/bin/activate `
### Installing dependencies
make setup for runtime dependencies
make setup-dev for development tools
### Running dedUCE
make install will install the CLI program deduce.
Run deduce -h to see usage.
### Testing
All tests live in the /tests directory. Run them using make test.
### Documentation
Documentation is generated by Sphinx using make docs.
### Code standards
Please adhere to the code standards set by the [Black](https://github.com/psf/black) autoformatter. You can format all Python code with make format.
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