Detecting novel pathogens from NGS reads in real-time during a sequencing run.
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DeePaC-Live
A DeePaC plugin for real-time analysis of Illumina sequencing runs. Captures HiLive2 output and uses deep neural nets to detect novel pathogens directly from NGS reads. See also DeePaC main repo: https://gitlab.com/rki_bioinformatics/DeePaC and HiLive2 repo: https://gitlab.com/rki_bioinformatics/HiLive2.
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