Define a personnal app to deploy on DeepChain.bio
Project description
Table of contents
- Description
- Installation
- CLI
- login
- create
- deploy
- apps
- How generate token to login deepchain?
- Getting started with App
- License
deepchain-apps
package documentation
This Package provide a cli for creating a personnal app to deploy on the DeepChain platform. More informations on app To leverage the apps capability, take a look at the bio-transformers and bio-datasets package, which provide functionnality to download biological dataset and easily use pre-trained transformers.
1. Installation
It is recommended to work with conda environnements in order to manage the specific dependencies of the package.
conda create --name deepchain-env python=3.7 -y
conda activate deepchain-env
pip install deepchain-apps
2. CLI commands
The CLI provides 5 main commands:
-
login : you need to supply the token provide on the plateform (PAT: personnal access token).
deepchain login
-
create : create a folder with a template app file
deepchain create my_application
-
deploy : the code and checkpoint are deployed on the plateform, you can select your app in the interface on the plateform.
-
with checkpoint upload
deepchain deploy my_application --checkpoint
-
Only the code
deepchain deploy my_application
-
-
apps :
-
Get info on all local/upload apps
deepchain apps --infos
-
Remove all local apps (files & config):
deepchain apps --reset
-
Remove a specific application (files & config):
deepchain apps --delete my_application
-
List all public apps:
deepchain apps --public
-
-
download :
- Download locally an app deployed on deepchain hub
deepchain download user.name@mail.com/AppName AppName
How generate token to login deepchain?
If you want to deploy biology app on deepchain, you should first create a personal account on deepchain and go to the user profile section. As you can see below, you will be able to generate a PAT (personal access token) that you can use with the CLI command:
deepchain login
3. Getting started with App
- deepchain-apps template located at: https://github.com/DeepChainBio/deep-chain-apps
- create new folder when using
deepchain create myapp
- app structure:
.
├── README.md # explain how to create an app
├── __init__.py # __init__ file to create python module
├── checkpoint
│ ├── __init__.py
│ └── Optionnal : model.pt # optional: model to be used in app must be placed there
├── examples
│ ├── app_with_checkpoint.py # example: app example with checkpoint
│ └── torch_classifier.py # example: show how to train a neural network with pre-trained embeddings
└── src
├── DESC.md # Desciption file of the application
├── __init__.py
├── app.py # main application script. Main class must be named App.
└── tags.json # file to register the tags on the hub.
License
This source code is licensed under the Apache 2 license found in the LICENSE
file in the root directory.
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