deepchain-apps 0.1.3

Define a personnal app for the user of DeepChain.bio

Table of contents

• Description
• Installation
• Getting started with App
• CLI
  • login
  • create
  • deploy
  • apps
• Roadmap
• Citations
• License

deepchain-apps : Create personnal app locally, deploy on deepchain.bio

This Package provide a cli for creating a personnal app to deploy on the DeepChain platform. To leverage the apps capability, take a look at the bio-transformers and bio-datasets package.

Installation

You can install the package directly from Pypi:

pip install deepchain-apps

Getting started with App

An application is a python folder that will be use on deepchain.bio platform to evaluate of protein. The final app must have the following architecture:

App structure

• my_application
  • src/
    • app.py
    • DESCRIPTION.md
    • tags.json
    • Optionnal : requirements.txt (for extra packages)
  • checkpoint/
    • Optionnal : model.[h5/pt]

The main app class must be named ’App’

Tags

In order your app to be visible and well documented, tags should be filled to precised at least the tasks section.

• tasks
• librairies
• embeddings
• datasets

CLI

The CLI provides 4 main commands:

• login : you need to supply the token provide on the plateform (PAT: personnal access token).

  deepchain login
  

• create : create a folder with a template app file

  deepchain create my_application
  

• deploy : the code and checkpoint are deployed on the plateform, you can select your app in the interface on the plateform.

  • with checkpoint upload

    deepchain deploy my_application --checkpoint
    

  • Only the code

    deepchain deploy my_application
    

• apps :

  • Get info on all local/upload apps

    deepchain apps --infos
    

  • Remove all local apps (files & config):

    deepchain apps --reset
    

  • Remove a specific application (files & config):

    deepchain apps --delete my_application
    

The application will be deploy in DeepChain plateform.

Roadmap:

• Synchronise apps with deepchain

Citations

License

This source code is licensed under the Apache 2 license found in the LICENSE file in the root directory.