Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout
Project description
deepcon-package
Python package for the DEEPCON contact prediction tool at https://github.com/ba-lab/DEEPCON
Contact:
Email: adhikarib@umsl.edu
Homepage: https://badriadhikari.github.io/
Paper: https://www.biorxiv.org/content/10.1101/590455v1
DEEPCON using Covariance features as input
Trained and validated using the 3456 proteins in the DeepCov dataset with the covariance features (441 channels) as input.
Installation Instructions:
Install DEEPCON-Covariance package
pip3 install deepcon
Intstructions for User:
Inside Python:
>>>import deepcon
>>>from deepcon import deepconcovariance
Predict
>>>deepconcovariance.main("input.aln","output.rr")
Evaluate
...
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