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Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout

Project description

deepcon-package

Python package for the DEEPCON contact prediction tool at https://github.com/ba-lab/DEEPCON

Contact:

Email: adhikarib@umsl.edu
Homepage: https://badriadhikari.github.io/
Paper: https://www.biorxiv.org/content/10.1101/590455v1

DEEPCON using Covariance features as input

Trained and validated using the 3456 proteins in the DeepCov dataset with the covariance features (441 channels) as input.

Installation Instructions:

Install DEEPCON-Covariance package

pip3 install deepcon

Intstructions for User:

Inside Python:

>>>import deepcon
>>>from deepcon import deepconcovariance

Predict

>>>deepconcovariance.main("input.aln","output.rr")

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