deepextractor 0.1.3

Deep learning framework for reconstructing gravitational wave signals and glitches from LIGO detector data

DeepExtractor

Deep learning framework for reconstructing gravitational-wave signals and glitches from LIGO detector data.

Built for LIGO's O3 observing run (Hanford and Livingston detectors). Described in the paper:

Time-domain reconstruction of signals and glitches in gravitational wave data with deep learning Dooney, Narola, Bromuri, Curier, Van Den Broeck, Caudill, Tan — Phys. Rev. D 112, 044022 (2025) 10.1103/s91m-c2jw

Documentation | GitHub | PyPI

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How it works

LIGO strain data contains both astrophysical signals and instrumental glitches — short-duration noise transients that can mimic or obscure gravitational-wave events. DeepExtractor frames glitch reconstruction as a supervised denoising problem:

Input:  h(t)  = background noise  +  glitch/signal
Output: n̂(t)  = predicted background
Result: ĝ(t)  = h(t) − n̂(t)   ← reconstructed glitch or signal

The model is a U-Net operating on STFT spectrograms (magnitude + phase). The default model, DeepExtractor_257, uses a 4-level U-Net with feature maps [64, 128, 256, 512].

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Installation

pip install deepextractor

Requires Python ≥ 3.10 and PyTorch ≥ 2.1. Pretrained weights are downloaded automatically from Hugging Face Hub on first use — no manual step required.

Install from source:

git clone https://github.com/tomdooney95/deepextractor.git
cd deepextractor
pip install -e ".[dev]"

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Quickstart

import numpy as np
import deepextractor

# Load model (bilby noise variant by default)
model = deepextractor.DeepExtractorModel()

# Reconstruct — extract the transient from noisy strain
noisy_strain = np.random.randn(8192)             # replace with real data
reconstructed = model.reconstruct(noisy_strain)  # extracted signal
background    = model.background(noisy_strain)   # noise estimate

# One-liner convenience function
reconstructed = deepextractor.reconstruct(noisy_strain)

Two pretrained variants are available:

Variant	Use case
bilby_noise (default)	Simulated LIGO/Virgo noise, injection studies
real_noise	Real LIGO O3 detector data

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Bundled dataset

The package ships a sample of the GravitySpy LIGO O3a high-confidence catalogue at assets/data_o3a_sample.csv — 10 H1 examples per glitch class (17 classes, 170 rows total), SNR > 15.

import pandas as pd
import importlib.resources as resources

with resources.path("deepextractor", "assets") as assets:
    df = pd.read_csv(assets / "data_o3a_sample.csv")

print(df["label"].value_counts())

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CLI tools

# Train a model
deepextractor-train --model DeepExtractor_257 --data-dir data/spectrogram_domain/

# Generate training data
deepextractor-generate --output-dir data/ --num-train 250000

# Convert time-domain data to spectrograms
deepextractor-specgen --input-dir data/time_domain/ --output-dir data/spectrogram_domain/

# Evaluate a trained model
deepextractor-evaluate --model DeepExtractor_257 --checkpoint-dir checkpoints/ --data-dir data/

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Citation

@article{s91m-c2jw,
  title     = {Time-domain reconstruction of signals and glitches in gravitational wave data with deep learning},
  author    = {Dooney, Tom and Narola, Harsh and Bromuri, Stefano and Curier, R. Lyana and Van Den Broeck, Chris and Caudill, Sarah and Tan, Daniel Stanley},
  journal   = {Phys. Rev. D},
  volume    = {112},
  issue     = {4},
  pages     = {044022},
  numpages  = {24},
  year      = {2025},
  month     = {Aug},
  publisher = {American Physical Society},
  doi       = {10.1103/s91m-c2jw},
  url       = {https://link.aps.org/doi/10.1103/s91m-c2jw}
}