deeporigin 2.5.0

Command line tool and Python client for working with Deep Origin

deeporigin

This repository contains the deeporigin CLI and Python client, which allows you to interact with Deep Origin from the command line and Python.

[!WARNING]
The deeporigin client is under active development. Features may change or be removed.

Installing

[!CAUTION] As a best practice, we recommend installing this package in a virtual environment.

To install this package, run the following:

pip install deeporigin

Configuration

To run this package outside of a Deep Origin workstation (for example, on your own computer), first you need to configure this package. After installing this package, run the following to configure your organization, replacing org-id with the ID of the Deep Origin organization that you would like to work with.

deeporigin config set organization_id [org-id]

Developing

First, download the source code from GitHub:

git clone [e-mail]:deeporiginbio/deeporigin-client.git
cd deeporigin-client

Second, run the code below to create a virtual environment and install this package into it. This requires make v4.4 or higher.

make install

Testing

Running the tests locally

To run the tests locally, execute the following:

make test

By default, the tests are run using mocked responses. To run the tests against the live Deep Origin API, execute the following:

make test client=default

Automated tests on GitHub Actions

The tests are automatically run on GitHub Actions on every commit to every pull request.

License

MIT