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Tools for unsupervised classification of acoustic signals.

Project description

Tools for unsupervised classification of acoustic signals

DeepSS-unsupervised provides tools for pre-processing acoustic signals for unsupervised classification:

  • extract waveforms or spectrograms of acoustic events from a recording
  • normalize the duration, center frequency, amplitude, or sign of waveform/spectrograms

Unsupervised classification itself is performed using existing libraries:

Can be Used in combination with DeepSS, a deep learning based method for the supervised annotation of acoustic signals.

Installation

pip install deepss-unsupervised

Demos

Illustration of the workflow and the method using vocalizations from:

Acknowledgements

Code from the following open source packages was modified and integrated into dss-unsupervised:

Data sources:

References

  1. T Sainburg, M Thielk, TQ Gentner (2020) Latent space visualization, characterization, and generation of diverse vocal communication signals. Biorxiv . https://doi.org/10.1101/870311

  2. J Clemens, P Coen, F Roemschied, T Perreira, D Mazumder, D Aldorando, D Pacheco, M Murthy (2018) Discovery of a New Song Mode in Drosophila Reveals Hidden Structure in the Sensory and Neural Drivers of Behavior. Current Biology 28, 2400–2412.e6 (2018). https://doi.org/10.1016/j.cub.2018.06.011

  3. D Stern (2014). Reported Drosophila courtship song rhythms are artifacts of data analysis. BMC Biology

  4. A Ivanenko, P Watkins, MAJ van Gerven, K Hammerschmidt, B Englitz (2020) Classifying sex and strain from mouse ultrasonic vocalizations using deep learning. PLoS Comput Biol 16(6): e1007918. https://doi.org/10.1371/journal.pcbi.1007918

  5. D Nicholson, JE Queen, S Sober (2017). Bengalese finch song repository. https://doi.org/10.6084/m9.figshare.4805749.v5

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