Segments and tracks bacteria
Project description
:construction: We are currently in the process of making DeLTA a conda-forge package. For this reason the code on this branch has been heavily restructured and more updates are coming. For the version reported in the biorxiv manuscript check out version 2.0-beta :construction:
DeLTA
NOTE This is version 2 of the DeLTA pipeline. For version 1, please check out branch 'version1'
DeLTA (Deep Learning for Time-lapse Analysis) is a deep learning-based image processing pipeline for segmenting and tracking single cells in time-lapse microscopy movies.
:scroll: To get started check out the documentation at delta.readthedocs.io
:bug: If you encounter bugs or have questions about the software, please use Gitlab's issue system
For the latest hotness check out the dev
branch. You can also quickly test DeLTA on our data or your own with Google Colab
for free here
See also our papers and manuscript for more details:
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