demultiplex 1.2.2

Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes

---

Versatile NGS demultiplexer with the following features:

• Support for FASTA and FASTQ files.

• Support for gzip and bzip2 compressed files.

• Support for multiple reads per fragment, e.g., paired-end.

• Handles barcodes in the header and in the reads.

• Handles barcodes at unknown locations in reads (e.g., PacBio or Nanopore barcodes).

• Support for selection of part of a barcode.

• Allows for mismatches, insertions and deletions.

• Barcode guessing by frequency or fixed amount.

• Handles large numbers (over one million) of barcodes.

Please see ReadTheDocs for the latest documentation.