Skip to main content

Diamond is a Python package for running tasks on HPC.

Project description

Diamond

Examples

login

Run

diamond-hpc get-oauth2-url-and-login

This cli will return an oauth2 url and wait for the user input, open the url in your broswer and follow the authorization process, finally you will get a token. Copy the token and input it back to the terminal, finish the authorization process

register container

  1. create an container build endpoint by configure and start custom-image-builder-config.yaml in the globus endpoint server
  2. run the following command(substitude the relevent text with your config)
diamond-hpc register-container --endpoint_id e099b614-c95e-4148-8ed9-6bd4684b92bc --work_path /work/09912/haotianxie/frontera --image_file_name 
openfold --base_image gcyang/openfold:0.1

This process may take a long time.

submit task via script file

  1. create an container build endpoint by start endpoint in the globus endpoint server
  2. run the following command(substitude the relevent text with your config)
diamond-hpc run-task-from-script --cmd_script /home/hotine/work/Diamond/example/sample_task/openfold_single_node_task --endpoint_id fb1ffeec-aa63-4136-8a49-f3f24608d36f --container_id a20b806c-29a8-44b4-97b6-591434ca9365 --log_path /work/09912/haotianxie/frontera/openfold_demo_single_node.log

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

diamond-hpc-0.0.6.tar.gz (9.4 kB view details)

Uploaded Source

Built Distribution

diamond_hpc-0.0.6-py3-none-any.whl (11.6 kB view details)

Uploaded Python 3

File details

Details for the file diamond-hpc-0.0.6.tar.gz.

File metadata

  • Download URL: diamond-hpc-0.0.6.tar.gz
  • Upload date:
  • Size: 9.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.10.12

File hashes

Hashes for diamond-hpc-0.0.6.tar.gz
Algorithm Hash digest
SHA256 e049a3b5aea68dddf98c583b45b4193b49f29140e8a1be52f2a42405cec6add6
MD5 34e1c9618147da798172075a64c2d729
BLAKE2b-256 f6b4d09a21b6ec699a29105dc23d47b1086b53475e2e8f1a4244104428901007

See more details on using hashes here.

File details

Details for the file diamond_hpc-0.0.6-py3-none-any.whl.

File metadata

  • Download URL: diamond_hpc-0.0.6-py3-none-any.whl
  • Upload date:
  • Size: 11.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.10.12

File hashes

Hashes for diamond_hpc-0.0.6-py3-none-any.whl
Algorithm Hash digest
SHA256 14b7cbdbd465f216dff73e8646806e9a41f4eb1dc6b535740eedeb7d368d4a25
MD5 a3936c6101e9d1346e5dc6d0b15e1673
BLAKE2b-256 30e686e9b28ea3edfeb1e652729c130c84bb55bf828380499a966ddeaecbe6f6

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page