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Fast and scalable differential expression analysis on single-cell RNA-seq data

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|PyPI| |Docs|

.. |PyPI| image:: https://img.shields.io/pypi/v/diffxpy.svg :target: https://pypi.org/project/diffxpy .. |Docs| image:: https://readthedocs.com/projects/diffxpy/badge/?version=latest :target: https://diffxpy.readthedocs.io

Fast and scalable differential expression analysis on single-cell RNA-seq data

diffxpy covers a wide range of differential expression analysis scenarios encountered in single-cell RNA-seq scenarios and integrates into scanpy_ workflows. Import diffxpy as import diffxpy.api as de to access the following differential expression analysis-related tools:

  1. differential expression analysis in the module de.test.*
  2. gene set enrichment analysis based on differential expression calls in the module de.enrich.*

Refer to the documentation_ and the tutorials_ for details of these modules.

.. _scanpy: https://github.com/theislab/scanpy .. _documentation: https://diffxpy.rtfd.io/en/latest .. _tutorials: https://diffxpy.rtfd.io/en/latest/tutorials.html

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