Fast and scalable differential expression analysis on single-cell RNA-seq data
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Fast and scalable differential expression analysis on single-cell RNA-seq data
diffxpy covers a wide range of differential expression analysis scenarios encountered in single-cell RNA-seq scenarios
and integrates into scanpy_ workflows.
Import diffxpy as import diffxpy.api as de
to access the following differential expression analysis-related tools:
- differential expression analysis in the module
de.test.*
- gene set enrichment analysis based on differential expression calls in the module
de.enrich.*
Refer to the documentation_ and the tutorials_ for details of these modules.
.. _scanpy: https://github.com/theislab/scanpy .. _documentation: https://diffxpy.rtfd.io/en/latest .. _tutorials: https://diffxpy.rtfd.io/en/latest/tutorials.html
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