The Dinucleotide Quantification Python package
Project description
DinuQ
The DinuQ (Dinucleotide Quantification) Python3 package provides a range of metrics for quantifying nucleotide, dinucleotide and synonymous codon representation in genetic sequences. These include the recently developed corrected Synonymous Dinucleotide Usage (SDUc) and corrected Relative Synonymous Dinucleotide Usage (RSDUc).
Current version: v.1.2.0
📃 Installation Instructions & Documentation 📃
📊 Visualise Results 📊
Citations:
- Lytras, S.; Hughes, J. (2020) Synonymous Dinucleotide Usage: A Codon-Aware Metric for Quantifying Dinucleotide Representation in Viruses. Viruses, 12:462.
- MacLean, O.#; Lytras, S.#; Weaver, S.; Singer, J.B.; Boni, M. F.; Lemey, P.; Kosakovsky Pond, S.L.; Robertson, D.L. (2021) Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen. PLoS Biol, 19(3):e3001115.
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
dinuq-1.2.0.tar.gz
(14.4 kB
view details)
Built Distribution
dinuq-1.2.0-py3-none-any.whl
(24.0 kB
view details)
File details
Details for the file dinuq-1.2.0.tar.gz.
File metadata
- Download URL: dinuq-1.2.0.tar.gz
- Upload date:
- Size: 14.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/34.0 requests/2.22.0 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.63.0 importlib-metadata/4.11.2 keyring/18.0.1 rfc3986/2.0.0 colorama/0.4.3 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 6b8d3a1f79f5722e753ea1620b512f3a050d4e5c86c39ca9ff42245f3f01cb3b |
|
| MD5 | f7d10e7da2af2c005adc3f0fb397e818 |
|
| BLAKE2b-256 | 1ff3a410d37233a0884eaae5924aba2d593db5d675dc8f70d787f5c82f44278e |
File details
Details for the file dinuq-1.2.0-py3-none-any.whl.
File metadata
- Download URL: dinuq-1.2.0-py3-none-any.whl
- Upload date:
- Size: 24.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/34.0 requests/2.22.0 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.63.0 importlib-metadata/4.11.2 keyring/18.0.1 rfc3986/2.0.0 colorama/0.4.3 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | edd0b19a26b828fb25cf17441bb70eada7e9281e40344e3a8860fa77ad37cac0 |
|
| MD5 | 20371eb0e0668919a6ba29bb31c1861d |
|
| BLAKE2b-256 | 7e71941b6455b8a095651870efe2692abebbf74c6896b5b3d7b25630e5fc59c4 |
