Package dipwmsearch
Description
This package provides efficient functions to search for one kind of probabilistic motifs known as di-nucleotidic Position Weight Matrices (di-PWMs) in a genomic sequence. The genomic sequence may contain positions with non-ATGC symbols, encoded with IUPAC.
Documentation
A full documentation details how to install and use the package, and also provides ready-to-use scripts for searching a motif in FASTA sequence.
Please refer to: https://rivals.lirmm.net/dipwmsearch/
Contact: dipwm@lirmm.fr
License
License type: CeCILL-B
Authors
- Marie Mille (main contributor)
- Bastien Cazaux
- Julie Ripoll
- Eric Rivals
Dependencies
Basics to install
pyahocorasickdocumentation
For tests
pytestpandas
Release files for dipwmsearch 0.1.8
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| dipwmsearch-0.1.8.tar.gz | 32.3 kB | Without provenance | Details for dipwmsearch-0.1.8.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| dipwmsearch-0.1.8-py3-none-any.whl | Python 3 | none | any | Details for dipwmsearch-0.1.8-py3-none-any.whl |
Total release size: 63.0 kB
Release files / dipwmsearch-0.1.8.tar.gz
| Download URL | dipwmsearch-0.1.8.tar.gz |
|---|---|
| Size | 32.3 kB |
| Tags | Source |
|
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Release files / dipwmsearch-0.1.8-py3-none-any.whl
| Download URL | dipwmsearch-0.1.8-py3-none-any.whl |
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| Size | 30.8 kB |
| Tags | Python 3 |
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