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Protein Feature Extraction package for Machine Learning

Project description

Build Status License: MIT codecov GitHub version GitHub issues


Protein Feature Extraction for Machine Learning


Python code to extract features from Protein sequences for Machine Learning/Deep Learning

Protein feature extraction is carried out using Biopython package

**Features inculde:

  1. AA-count
  2. aromaticity
  3. secondary_structure_fraction
  4. isoelectric_point
  5. molecular_weight
  6. instability_index

Packages required (other than built-in) for the execution of code... -Pandas -pickle -Biopython -subprocess

Installation

For windows

pip install discere

For linux

pip3 install discere

Usage

  import discere.discere as di

  di.extract_feature('./Documents/positive_training.fasta', 
                     './Documents/negative_training.fasta', 
                     './Documents')

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