Protein Feature Extraction package for Machine Learning
Project description
Protein Feature Extraction for Machine Learning
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
Protein feature extraction is carried out using Biopython package
**Features inculde:
- AA-count
- aromaticity
- secondary_structure_fraction
- isoelectric_point
- molecular_weight
- instability_index
Packages required (other than built-in) for the execution of code... -Pandas -pickle -Biopython -subprocess
Installation
For windows
pip install discere
For linux
pip3 install discere
Usage
import discere.discere as di
di.extract_feature('./Documents/positive_training.fasta',
'./Documents/negative_training.fasta',
'./Documents')
output
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