discere 0.0.4

Protein Feature Extraction package for Machine Learning

Protein Feature Extraction for Machine Learning

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

Protein feature extraction is carried out using Biopython package

**Features inculde:

1. AA-count
2. aromaticity
3. secondary_structure_fraction
4. isoelectric_point
5. molecular_weight
6. instability_index

Packages required (other than built-in) for the execution of code... -Pandas -pickle -Biopython -subprocess

Installation

For windows

pip install discere

For linux

pip3 install discere

Usage

  import discere.discere as di

  di.extract_feature('./Documents/positive_training.fasta', 
                     './Documents/negative_training.fasta', 
                     './Documents')

output