A simple Django app to conduct web-based blast+ local alignment search.
Project description
A simple Django app to conduct web-based homology search with blast+.
Requirements
Blast+
Python 2.7
Django 1.6-1.8
pip install django
Biopython
pip install biopython
Download
Get the latest version of django-blastplus from https://pypi.python.org/pypi/django-blastplus/
Install
Install with pip
pip install django-blastplus
To get the git version do
$ git clone https://github.com/michal-stuglik/django-blastplus.git
Quick start
Add “blastplus” to your INSTALLED_APPS setting like this:
INSTALLED_APPS = ( 'blastplus', )
Include the polls URLconf in your project urls.py like this:
url(r'^blast/', include('blastplus.urls')),
You can modify some defaults in blastplus.settings
e.g. modify name or path to nucleotide database:
BLAST_DB_NUCL = os.path.join(BASE_DIR, 'blastplus/sampledata/sample_db')
Visit search pages:
Example
See our NewtBase portal with django-blastplus app inside
Project details
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Source Distribution
django-blastplus-0.2.2.tar.gz
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