django-blastplus 2.0.5

A simple Django app to conduct web-based blast+ local alignment search.

django-blastplus

A simple Django app to conduct web-based homology search with blast+.

Requirements

1. Blast+
2. Python 3
3. Django 2.0
4. Biopython

Install

pipenv install

Download

Quick start

1. Add "blastplus" to your INSTALLED_APPS setting like this::

INSTALLED_APPS = (
        'blastplus',
)

2. Include the polls URLconf in your project urls.py like this::

url(r'^blast/', include('blastplus.urls')),

3. You can modify some defaults in blastplus.settings

   • e.g. modify path to nucleotide database::

BLAST_DB_NUCL_LIST = [
            {
                "name": "sample1",
                "path": 'blastplus/sampledata/sample_db1/sample_db',
                "desc": "Sample database 1",
                "annotated": False, },
            {
                "name": "sample2",
                "path": 'blastplus/sampledata/sample_db2/sample_db2',
                "desc": "Sample database 2",
                "annotated": False, },
        ]

4. Visit search pages:

• Blastn http://127.0.0.1:8000/blast/blastn

• TBlastn http://127.0.0.1:8000/blast/tblastn

• Blastp http://127.0.0.1:8000/blast/blastp

• Blastx http://127.0.0.1:8000/blast/blastx

Example

See our NewtBase portal with django-blastplus app inside

http://newtbase.eko.uj.edu.pl/blast/blastn/