Bringing statistics to your CADD projects
Statistics for your Computer Aided Drug Design projects as a django specific package. View CADD Stat now: http://caddstat.eyesopen.com
The aim of CADD Stat is to cover all the statistics covered in the placemat that was present at the conference.
Contributions are welcome as a pull request. Do not forget to add yourself to the AUTHORS file. Learn more about GitHub pull requests. All contributions are subject the same license as CADD Stat. To create suitable development environment in a virtualenv run pip install -r requirements.txt. Please run the test suite before submitting a pull request:
python runtests.py # or python setup.py test
You can test against multiple Django versions by running tox or run in parallel with detox. Check our test coverage by running:
coverage run runtests.py
CADD Stat is provided with a BSD 3-clause license, see the LICENSE file for full details. In addition it utilizes numerous other python open source libraries all of which are listed in requirements.txt.
Grab the latest released version from PyPi and install into a virtualenv:
pip install django-caddstat pip install django-caddstat[numpy] pip install django-caddstat[statslibs] pip install django-caddstat[statsmodels]
Multiple installation steps are required because of the way the scientific python ecosystem handles packaging. Note that Numpy and SciPy have multiple system dependencies (e.g. Fortran) which must be met before using pip. Read more on the SciPy website.
To install the development version of CADD Stat you must install like this:
pip install -e git+https://github.com/oess/django-caddstat.git#egg=django-caddstat pip install -e git+https://github.com/oess/django-caddstat.git#egg=django-caddstat[numpy] pip install -e git+https://github.com/oess/django-caddstat.git#egg=django-caddstat[statslibs] pip install -e git+https://github.com/oess/django-caddstat.git#egg=django-caddstat[statsmodels]
Create or use an existing Django project:
pip install django django-admin.py startproject mysite cd mysite/mysite
Add caddstat and analytical to your INSTALLED_APPS in settings.py:
INSTALLED_APPS = ( ... 'analytical', 'caddstat', )
Add an entry to your project urls.py:
urlpatterns = patterns( '', url(r'^', include('caddstat.urls')), ... )
In this example CADD Stat will now be available on the root of your web site, e.g. http://127.0.0.1:8000. You can start a local webserver with:
python manage.py runserver 8000
Note CADD Stat uses Celery to place all statistical tests in a queue. The above example does not use celery.
The feedback form (http://127.0.0.1:8000/feedback/) will send an email to the address specified in the setting CADDSTAT_FEEDBACK_EMAIL, the default is email@example.com. Set a new value in your settings.py. Ensure you have configured a email backend within your project first, see https://docs.djangoproject.com/en/dev/topics/email/ for more information.