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Galaxy interfacing with Django

Project description

Build Status (Travis) Py versions

Django interfacing with Galaxy. Backend using the bioblend API.

Galaxy is a web based workflow platform that can be used to perform bioinformatics in a reproducible and sharable environment.

Further documentation available on ReadTheDocs

Quick start

  1. Add “galaxy” and django application dependencies to your INSTALLED_APPS setting like this (galaxy should come before gfiles):

  2. Include the polls URLconf in your project like this:

    url(r'^', include('gfiles.urls')),
    url('galaxy/', include('galaxy.urls')),
  3. Run python migrate to create the models.

  4. Start the development server and visit

  5. Register and login

  6. View summary of Galaxy instances and options

  7. Register Galaxy instance

  8. Register Galaxy user

  9. Upload file(s) to Django (for bulk upload of files see django-misa and django-mogi)

  10. Upload file(s) to Galaxy data library (for bulk upload of files see django-misa and django-mogi)

  11. Run workflow (for running workflows with ISA data see django-misa and django-mogi)

  12. View histories

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