Django app to parse, store, and update HPO terms
Documentation
The full documentation is at https://django-hpo-terms.readthedocs.io.
Quickstart
Install Django HPO Terms:
pip install django-hpo-terms
Add it to your INSTALLED_APPS (along with DRF and django-filters):
INSTALLED_APPS = (
...
'rest_framework',
'django_filters',
...
'hpo_terms',
'genome',
...
)Add Django HPO Terms’s URL patterns:
from hpo_terms import urls as hpo_terms_urls
urlpatterns = [
...
url(r'^', include(hpo_terms_urls, namespace='hpo_terms')),
...
]Features
TODO
Running Tests
Does the code actually work?
source <YOURVIRTUALENV>/bin/activate (myenv) $ pip install tox (myenv) $ tox
Credits
Tools used in rendering this package:
History
0.1.0 (2017-12-29)
First release on PyPI.
Initial models and REST API.
0.2.0 (2017-12-31)
Added syncing of database with online HPO resources.
0.3.0 (2017-01-02)
Added Disease genes model and REST API.
Synced Disease genes from online HPO resource.
0.3.1 (2017-01-04)
Fixed minor bugs
Added better test coverage for hpo_sync.
0.4.0 (2017-01-05)
Improved REST API filters.
0.4.1 (2017-01-09)
Fixed issues with migrations.
0.4.2 (2017-01-12)
Fixed route names for SimpleRouter.
0.5.0 (2017-02-09)
Add gene symbol filter for diseases API
Added HPO term label to disease API
updated requirements to the latest
0.6.0 (2017-03-30)
updated some dependencies
0.7.0 (2017-04-04)
Added support for GraphQL
0.8.0 (2017-04-07)
Added support for Django 2.0 and Python 3.6
Dropped support for Django < 1.11 and Python 2.7, 3.3, 3.4
1 maintainer
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