Django app to parse, store, and update HPO terms
Project description
=============================
Django HPO Terms
=============================
.. image:: https://badge.fury.io/py/django-hpo-terms.svg
:target: https://badge.fury.io/py/django-hpo-terms
.. image:: https://travis-ci.org/chopdgd/django-hpo-terms.svg?branch=develop
:target: https://travis-ci.org/chopdgd/django-hpo-terms
.. image:: https://codecov.io/gh/chopdgd/django-hpo-terms/branch/develop/graph/badge.svg
:target: https://codecov.io/gh/chopdgd/django-hpo-terms
.. image:: https://pyup.io/repos/github/chopdgd/django-hpo-terms/shield.svg
:target: https://pyup.io/repos/github/chopdgd/django-hpo-terms/
:alt: Updates
.. image:: https://pyup.io/repos/github/chopdgd/django-hpo-terms/python-3-shield.svg
:target: https://pyup.io/repos/github/chopdgd/django-hpo-terms/
:alt: Python 3
Django app to parse, store, and update HPO terms
Documentation
-------------
The full documentation is at https://django-hpo-terms.readthedocs.io.
Quickstart
----------
Install Django HPO Terms::
pip install django-hpo-terms
Add it to your `INSTALLED_APPS` (along with DRF and django-filters):
.. code-block:: python
INSTALLED_APPS = (
...
'rest_framework',
'django_filters',
...
'hpo_terms',
'genome',
...
)
Add Django HPO Terms's URL patterns:
.. code-block:: python
from hpo_terms import urls as hpo_terms_urls
urlpatterns = [
...
url(r'^', include(hpo_terms_urls, namespace='hpo_terms')),
...
]
Features
--------
* TODO
Running Tests
-------------
Does the code actually work?
::
source <YOURVIRTUALENV>/bin/activate
(myenv) $ pip install tox
(myenv) $ tox
Credits
-------
Tools used in rendering this package:
* Cookiecutter_
* `cookiecutter-djangopackage`_
.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`cookiecutter-djangopackage`: https://github.com/pydanny/cookiecutter-djangopackage
History
-------
0.1.0 (2017-12-29)
++++++++++++++++++
* First release on PyPI.
* Initial models and REST API.
0.2.0 (2017-12-31)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.1.0...v0.2.0)>`_
* Added syncing of database with online HPO resources.
0.3.0 (2017-01-02)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.2.0...v0.3.0)>`_
* Added Disease genes model and REST API.
* Synced Disease genes from online HPO resource.
0.3.1 (2017-01-04)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.3.0...v0.3.1)>`_
* Fixed minor bugs
* Added better test coverage for hpo_sync.
0.4.0 (2017-01-05)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.3.1...v0.4.0)>`_
* Improved REST API filters.
0.4.1 (2017-01-09)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.0...v0.4.1)>`_
* Fixed issues with migrations.
0.4.2 (2017-01-12)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.1...v0.4.2)>`_
* Fixed route names for SimpleRouter.
0.5.0 (2017-02-09)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.2...v0.5.0)>`_
* Add gene symbol filter for diseases API
* Added HPO term label to disease API
* updated requirements to the latest
0.6.0 (2017-03-30)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.5.0...v0.6.0)>`_
* updated some dependencies
Django HPO Terms
=============================
.. image:: https://badge.fury.io/py/django-hpo-terms.svg
:target: https://badge.fury.io/py/django-hpo-terms
.. image:: https://travis-ci.org/chopdgd/django-hpo-terms.svg?branch=develop
:target: https://travis-ci.org/chopdgd/django-hpo-terms
.. image:: https://codecov.io/gh/chopdgd/django-hpo-terms/branch/develop/graph/badge.svg
:target: https://codecov.io/gh/chopdgd/django-hpo-terms
.. image:: https://pyup.io/repos/github/chopdgd/django-hpo-terms/shield.svg
:target: https://pyup.io/repos/github/chopdgd/django-hpo-terms/
:alt: Updates
.. image:: https://pyup.io/repos/github/chopdgd/django-hpo-terms/python-3-shield.svg
:target: https://pyup.io/repos/github/chopdgd/django-hpo-terms/
:alt: Python 3
Django app to parse, store, and update HPO terms
Documentation
-------------
The full documentation is at https://django-hpo-terms.readthedocs.io.
Quickstart
----------
Install Django HPO Terms::
pip install django-hpo-terms
Add it to your `INSTALLED_APPS` (along with DRF and django-filters):
.. code-block:: python
INSTALLED_APPS = (
...
'rest_framework',
'django_filters',
...
'hpo_terms',
'genome',
...
)
Add Django HPO Terms's URL patterns:
.. code-block:: python
from hpo_terms import urls as hpo_terms_urls
urlpatterns = [
...
url(r'^', include(hpo_terms_urls, namespace='hpo_terms')),
...
]
Features
--------
* TODO
Running Tests
-------------
Does the code actually work?
::
source <YOURVIRTUALENV>/bin/activate
(myenv) $ pip install tox
(myenv) $ tox
Credits
-------
Tools used in rendering this package:
* Cookiecutter_
* `cookiecutter-djangopackage`_
.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`cookiecutter-djangopackage`: https://github.com/pydanny/cookiecutter-djangopackage
History
-------
0.1.0 (2017-12-29)
++++++++++++++++++
* First release on PyPI.
* Initial models and REST API.
0.2.0 (2017-12-31)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.1.0...v0.2.0)>`_
* Added syncing of database with online HPO resources.
0.3.0 (2017-01-02)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.2.0...v0.3.0)>`_
* Added Disease genes model and REST API.
* Synced Disease genes from online HPO resource.
0.3.1 (2017-01-04)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.3.0...v0.3.1)>`_
* Fixed minor bugs
* Added better test coverage for hpo_sync.
0.4.0 (2017-01-05)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.3.1...v0.4.0)>`_
* Improved REST API filters.
0.4.1 (2017-01-09)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.0...v0.4.1)>`_
* Fixed issues with migrations.
0.4.2 (2017-01-12)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.1...v0.4.2)>`_
* Fixed route names for SimpleRouter.
0.5.0 (2017-02-09)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.4.2...v0.5.0)>`_
* Add gene symbol filter for diseases API
* Added HPO term label to disease API
* updated requirements to the latest
0.6.0 (2017-03-30)
++++++++++++++++++
`Full Changelog <https://github.com/chopdgd/django-hpo-terms/compare/v0.5.0...v0.6.0)>`_
* updated some dependencies
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
django-hpo-terms-0.6.0.tar.gz
(15.6 kB
view hashes)
Built Distribution
Close
Hashes for django_hpo_terms-0.6.0-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 3c5064890ccd07650cc413dfb10e1812be53f60fa363048d4d57293fb5ff1bf4 |
|
MD5 | 470869a8639e96265d4f2e6b166544a2 |
|
BLAKE2b-256 | 3d24db0af7696eb5a3d0490c1f13a97063caf380ebad1de9f1ffd28b925520b6 |