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mbrowse

Browse, view and search metabolomic datasets

Further documentation available on ReadTheDocs

Quick start

Add “mbrowse” and django application dependencies to your INSTALLED_APPS setting like this (mbrowse should come before gfiles):

INSTALLED_APPS = [
    ...
    'mbrowse',
    'gfiles',

    'django_tables2',
    'django_tables2_column_shifter',
    'django_filters',
    'bootstrap3',
    'django_sb_admin',
    'dal',
    'dal_select2',
]

Include the polls URLconf in your project urls.py like this:

url(r'^', include('gfiles.urls')),
url('mbrowse/', include('mbrowse.urls')),

Run python manage.py migrate to create the mbrowse models.
Start the development server and visit http://127.0.0.1:8000/mbrowse/general_summary
Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/
Upload metabolomics mzML files (can also be done with djang-misa and django-mogi) http://127.0.0.1:8000/mbrowse/upload_mfiles_batch/
Upload LC-MS data set (can be done through galaxy, see django-mogi) http://127.0.0.1:8000/mbrowse/upload_lcms_dataset/
Browse and view the datasets http://127.0.0.1:8000/mbrowse/cpeakgroupmeta_summary/
Browse and view the annotations http://127.0.0.1:8000/mbrowse/cpeakgroupmeta_summary/
Search the datasets http://127.0.0.1:8000/mbrowse/search_result_summary/

Metadata

Release files for django-mbrowse 0.0.2

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Source distribution (sdist)

Source distribution for django-mbrowse 0.0.2
File	Size	Uploaded	Provenance
django-mbrowse-0.0.2.tar.gz	68.3 kB	Jul 30, 2019	Without provenance	Details

Built distribution (wheel)

Table of built distributions (wheels) for django-mbrowse 0.0.2
File	Interpreter	ABI	Platform	Reset
django_mbrowse-0.0.2-py3-none-any.whl 97.9 kB Jul 30, 2019 Without provenance	Python 3	none	any	Details

Total release size: 166.2 kB

Release files / django-mbrowse-0.0.2.tar.gz

Download URL	django-mbrowse-0.0.2.tar.gz
Size	68.3 kB
Tags	Source
SHA-256 checksum How to use checksums	`fb27e39feb1fdde2350ff284595e788f304eb42c7d850350726ffa9164931ce1`
BLAKE2b-256 checksum How to use checksums	`97ab7c01534a65adc442f7f826ce4ac14edfde096989c698cd617f2c76b85bcd`
Upload date	Jul 30, 2019
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.3`

Release files / django_mbrowse-0.0.2-py3-none-any.whl

Download URL	django_mbrowse-0.0.2-py3-none-any.whl
Size	97.9 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`77de1c3febaa80ee1706697434c0df146143bdbe7b96181c6911eeec462156bb`
BLAKE2b-256 checksum How to use checksums	`49633631cb43e95a6f592d18f360adcf859d4ef4ac6e1e964a3950e89b7e95cc`
Upload date	Jul 30, 2019
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.3`

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