Skip to main content

Browse and View Metabolomic datasets

Project description

Build Status (Travis) Py versions

Browse, view and search metabolomic datasets

Further documentation available on ReadTheDocs

Quick start

  1. Add “mbrowse” and django application dependencies to your INSTALLED_APPS setting like this (mbrowse should come before gfiles):

    INSTALLED_APPS = [
        ...
        'mbrowse',
        'gfiles',
    
        'django_tables2',
        'django_tables2_column_shifter',
        'django_filters',
        'bootstrap3',
        'django_sb_admin',
        'dal',
        'dal_select2',
    ]
    
  2. Include the polls URLconf in your project urls.py like this:

    url(r'^', include('gfiles.urls')),
    url('mbrowse/', include('mbrowse.urls')),
    
  3. Run python manage.py migrate to create the mbrowse models.

  4. Start the development server and visit http://127.0.0.1:8000/mbrowse/general_summary

  5. Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/

  6. Upload metabolomics mzML files (can also be done with djang-misa and django-mogi) http://127.0.0.1:8000/mbrowse/upload_mfiles_batch/

  7. Upload LC-MS data set (can be done through galaxy, see django-mogi) http://127.0.0.1:8000/mbrowse/upload_lcms_dataset/

  8. Browse and view the datasets http://127.0.0.1:8000/mbrowse/cpeakgroupmeta_summary/

  9. Browse and view the annotations http://127.0.0.1:8000/mbrowse/cpeakgroupmeta_summary/

  10. Search the datasets http://127.0.0.1:8000/mbrowse/search_result_summary/

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for django-mbrowse, version 0.0.2
Filename, size File type Python version Upload date Hashes
Filename, size django_mbrowse-0.0.2-py3-none-any.whl (97.9 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size django-mbrowse-0.0.2.tar.gz (68.3 kB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page