Browse and View Metabolomic datasets
Project description
Browse, view and search metabolomic datasets
Further documentation available on ReadTheDocs
Quick start
Add “mbrowse” and django application dependencies to your INSTALLED_APPS setting like this (mbrowse should come before gfiles):
INSTALLED_APPS = [ ... 'mbrowse', 'gfiles', 'django_tables2', 'django_tables2_column_shifter', 'django_filters', 'bootstrap3', 'django_sb_admin', 'dal', 'dal_select2', ]
Include the polls URLconf in your project urls.py like this:
url(r'^', include('gfiles.urls')), url('mbrowse/', include('mbrowse.urls')),
Run python manage.py migrate to create the mbrowse models.
Start the development server and visit http://127.0.0.1:8000/mbrowse/general_summary
Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/
Upload metabolomics mzML files (can also be done with djang-misa and django-mogi) http://127.0.0.1:8000/mbrowse/upload_mfiles_batch/
Upload LC-MS data set (can be done through galaxy, see django-mogi) http://127.0.0.1:8000/mbrowse/upload_lcms_dataset/
Browse and view the datasets http://127.0.0.1:8000/mbrowse/cpeakgroupmeta_summary/
Browse and view the annotations http://127.0.0.1:8000/mbrowse/cpeakgroupmeta_summary/
Search the datasets http://127.0.0.1:8000/mbrowse/search_result_summary/
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