A simple API (build on top of the Django Model API) to store and manage MIP (molecular inversion probe) markers.
Project description
A simple API (build on top of the Django Model API) to store and manage MIP (molecular inversion probe) markers. Detailed markers description e.g in [Science 338, 1619 (2012)].
Prerequisites
#### Python 2.7
Linux
probably, you already have it!
Windows
- download & install: https://www.python.org/ftp/python/2.7.10/python-2.7.10.msi
remember to select “Add python.exe to Path”
#### pip & virtualenv (optional)
Linux (Ubuntu/Debian)
sudo apt-get install python-pip python-dev build-essential sudo pip install –upgrade pip sudo pip install –upgrade virtualenv
Windows
With Python 2.7.10 version, pip is a part of the Python for Windows installer.
Windows alternatively: pip can be downloaded with this script: [get-pip.py], and installed by running in console:
C:> python get-pip.py
Requirements
#### Django 1.7-1.8
pip install django
#### Python-PostgreSQL Database Adapter
Linux
pip install psycopg2
Windows
pip install git+https://github.com/nwcell/psycopg2-windows.git@win32-py27#egg=psycopg2
Windows alternatively: download & install from win-psycopg project site - e.g. [psycopg2]
Download
#### package [![PyPI version](https://badge.fury.io/py/django-mips.svg)](http://badge.fury.io/py/django-mips) [![Code Health](https://landscape.io/github/michal-stuglik/django-mips/master/landscape.svg?style=flat)](https://landscape.io/github/michal-stuglik/django-mips/master) [![Build Status](https://travis-ci.org/michal-stuglik/django-mips.svg?branch=master)](https://travis-ci.org/michal-stuglik/django-mips) [![Code Climate](https://codeclimate.com/github/michal-stuglik/django-mips/badges/gpa.svg)](https://codeclimate.com/github/michal-stuglik/django-mips)
#### source code
$ git clone https://github.com/michal-stuglik/django-mips.git
#### with pip (recommended)
Install with pip
- pip install django-mips
you will find mips folder in your Python directory
Setup
#### outside Django project, in python scripts:
set database connection details in mips.dbsettings_default.py
set the DJANGO_SETTINGS_MODULE environment variable to “mips.settings”
import os os.environ.setdefault(“DJANGO_SETTINGS_MODULE”, “mips.settings”)
set up Django: django.setup()
import django django.setup()
Examples
[scripts & README]
[get-pip.py]: https://raw.github.com/pypa/pip/master/contrib/get-pip.py [image]: https://pypip.in/v/django-mips/badge.png [1]: https://pypip.in/d/django-mips/badge.png [scripts & README]: https://github.com/michal-stuglik/django-mips/tree/master/mips/example [psycopg2]: http://stickpeople.com/projects/python/win-psycopg/2.6.0/psycopg2-2.6.0.win32-py2.7-pg9.4.1-release.exe [pythonwin]: https://www.python.org/ftp/python/2.7.10/python-2.7.10.msi [django-mips]: https://pypi.python.org/pypi/django-mips [Science 338, 1619 (2012)]: http://www.sciencemag.org/content/338/6114/1619
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