django-mips 0.3.1

A simple API (build on top of the Django Model API) to store and manage MIP (molecular inversion probe) markers.

A simple API (build on top of the Django Model API) to store and manage MIP (molecular inversion probe) markers. Detailed markers description e.g in [Science 338, 1619 (2012)].

Prerequisites

#### Python 2.7

Linux

probably, you already have it!

Windows

download & install: https://www.python.org/ftp/python/2.7.10/python-2.7.10.msi

remember to select “Add python.exe to Path”

#### pip & virtualenv (optional)

Linux (Ubuntu/Debian)

sudo apt-get install python-pip python-dev build-essential sudo pip install –upgrade pip sudo pip install –upgrade virtualenv

Windows

With Python 2.7.10 version, pip is a part of the Python for Windows installer.

Windows alternatively: pip can be downloaded with this script: [get-pip.py], and installed by running in console:

C:> python get-pip.py

Requirements

#### Django 1.7-1.8

pip install django

#### Python-PostgreSQL Database Adapter

Linux

pip install psycopg2

Windows

pip install git+https://github.com/nwcell/psycopg2-windows.git@win32-py27#egg=psycopg2

Windows alternatively: download & install from win-psycopg project site - e.g. [psycopg2]

http://stickpeople.com/projects/python/win-psycopg/

Download

#### package [](http://badge.fury.io/py/django-mips) [](https://landscape.io/github/michal-stuglik/django-mips/master) [](https://travis-ci.org/michal-stuglik/django-mips) [](https://codeclimate.com/github/michal-stuglik/django-mips)

https://pypi.python.org/pypi/django-mips

#### source code

$ git clone https://github.com/michal-stuglik/django-mips.git

#### with pip (recommended)

Install with pip

pip install django-mips

you will find mips folder in your Python directory

Setup

#### outside Django project, in python scripts:

• set database connection details in mips.dbsettings_default.py

• set the DJANGO_SETTINGS_MODULE environment variable to “mips.settings”

  import os os.environ.setdefault(“DJANGO_SETTINGS_MODULE”, “mips.settings”)

• set up Django: django.setup()

  import django django.setup()

Examples

[scripts & README]

[get-pip.py]: https://raw.github.com/pypa/pip/master/contrib/get-pip.py [image]: https://pypip.in/v/django-mips/badge.png [1]: https://pypip.in/d/django-mips/badge.png [scripts & README]: https://github.com/michal-stuglik/django-mips/tree/master/mips/example [psycopg2]: http://stickpeople.com/projects/python/win-psycopg/2.6.0/psycopg2-2.6.0.win32-py2.7-pg9.4.1-release.exe [pythonwin]: https://www.python.org/ftp/python/2.7.10/python-2.7.10.msi [django-mips]: https://pypi.python.org/pypi/django-mips [Science 338, 1619 (2012)]: http://www.sciencemag.org/content/338/6114/1619