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Metabolomics Organisation with Galaxy and ISA

Project description

Build Status (Travis) Py versions

Metabolomics organisation with Galaxy and ISA

Further documentation available on ReadTheDocs

Quick start

  1. Add “mogi” and django application dependencies to your INSTALLED_APPS setting like this (mogi should come before gfiles, galaxy, mbrowse and misa):

  2. Include the URLconf in your project like this:

    url(r'^', include('gfiles.urls')),
    url('mogi/', include('mogi.urls')),
    url('mbrowse/', include('mbrowse.urls')),
    url('misa/', include('misa.urls')),
    url('galaxy/', include('galaxy.urls')),
  3. Run python migrate to create the mogi models.

  4. Start the development server and visit

  5. Register and login

  6. General overview

  7. Create, edit, view and export ISA projects

  8. Upload to Galaxy, run Galaxy workflows and view Galaxy histories

  9. Browse, view and search metabolomic datasets

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