Skip to main content

collect statistics from the entire PDB library

Project description

A collection of tiny scripts to help automate the process of downloading and extracting coordinates, sequences, and secondary-structure information from (a representative subset of) structures from the entire PDB library. These scripts were originally used to estimate distances distances and angles between specific atoms in proteins and DNA. The distribution of these distances and angles can be used to estimate force-field parameters for coarse grained models for these biomolecules.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

dlpdb-0.2.1.tar.gz (36.5 kB view details)

Uploaded Source

Built Distribution

dlpdb-0.2.1-py3-none-any.whl (75.5 kB view details)

Uploaded Python 3

File details

Details for the file dlpdb-0.2.1.tar.gz.

File metadata

  • Download URL: dlpdb-0.2.1.tar.gz
  • Upload date:
  • Size: 36.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/39.1.0 requests-toolbelt/0.8.0 tqdm/4.27.0 CPython/3.6.5

File hashes

Hashes for dlpdb-0.2.1.tar.gz
Algorithm Hash digest
SHA256 07949f5c19e3b692e3968419bdb40274f9cd8a1cab610666c5b7a3fe704b6be1
MD5 df4200bf2770b2fdcfc7f1c886db6ab2
BLAKE2b-256 fbbcdf0e705b07bd70af570cd3747548c360d07b579087f0f68b289985ef8d72

See more details on using hashes here.

File details

Details for the file dlpdb-0.2.1-py3-none-any.whl.

File metadata

  • Download URL: dlpdb-0.2.1-py3-none-any.whl
  • Upload date:
  • Size: 75.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/39.1.0 requests-toolbelt/0.8.0 tqdm/4.27.0 CPython/3.6.5

File hashes

Hashes for dlpdb-0.2.1-py3-none-any.whl
Algorithm Hash digest
SHA256 cd2399faa38943c714a8c8139288a70addb486f8f5909cfc0f8751b5d2522447
MD5 417a8dd91d3f7887962f6bd30d85cb0c
BLAKE2b-256 653a8b0b301fc65a7a9bcf53ef65cacd28a9f655a99eae5ae175be4b1eceb195

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page