dna-features-viewer

Plot features from DNA sequences (e.g. Genbank) with Python

Project description

DNA Features Viewer is a Python library to visualize DNA features, e.g. from GenBank or Gff files:

DNA Features Viewer can plot sequence maps linearly or circularly, with or without nucleotide sequence and amino-acid sequences. The plotter automatically produces clear plots even for sequences with many overlapping features and long labels. The library plays well with Matplotlib and Biopython, and the figures can be saved in different formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS interfaces.

Infos

PIP installation:

pip install dna_features_viewer

Web documentation:

https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/

Github Page

https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer

Live demo

http://cuba.genomefoundry.org/plot-sequence-features

License: MIT, Copyright Edinburgh Genome Foundry

More biology software

https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png

DNA Features Viewer is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.

Project details

Release history Release notifications | RSS feed

This version

3.1.3

Nov 1, 2023

3.1.2

Dec 17, 2022

3.1.1

May 5, 2022

3.1.0

Sep 21, 2021

3.0.3

Sep 20, 2020

3.0.2

Sep 5, 2020

3.0.1

Jan 10, 2020

3.0

Jan 7, 2020

2.5.0

Jan 6, 2020

2.4

Jan 5, 2020

2.3.1

Dec 19, 2019

2.3.0

Dec 10, 2019

2.2.0

Dec 5, 2019

2.0.2

Oct 16, 2019

2.0.1

Oct 16, 2019

2.0.0

Oct 6, 2019

1.0.0

May 15, 2019

0.2.2

Mar 14, 2019

0.2.1

Mar 10, 2019

0.2.0

Jan 31, 2019

0.1.9

Jun 27, 2018

0.1.8

Feb 16, 2018

0.1.7

Feb 16, 2018

0.1.6

Jan 31, 2018

0.1.5

Nov 20, 2017

0.1.4

Nov 20, 2017

0.1.3

May 29, 2017

0.1.2a0 pre-release

Mar 2, 2017

0.1.1

Dec 14, 2016

0.1.0

Sep 22, 2016

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