dnacauldron

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

Project description

DNA Cauldron provides a generic cloning simulation framework to predict constructs sequences and detect assembly flaws. It can simulate Golden-Gate, with extra features like enzyme or connector parts autoselection, and other methods like Gibson Assembly, LCR Assembly, BASIC assembly, BioBrick assembly. It supports single and combinatorial assemblies, hierarchical assemblies, and produces nice reports for traceability and troubleshooting.

Infos

PIP installation:

pip install dnacauldron

Web documentation:

https://edinburgh-genome-foundry.github.io/DnaCauldron/

Github Page:

https://github.com/Edinburgh-Genome-Foundry/DnaCauldron

Live demo:

http://cuba.genomefoundry.org/simulate_gg_assemblies

License: MIT, Copyright Edinburgh Genome Foundry

More biology software

https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png

DNA Cauldron is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.

Project details

Release history Release notifications | RSS feed

2.0.9

Jul 28, 2023

2.0.8

May 25, 2023

2.0.7

Jun 10, 2022

2.0.6

May 5, 2022

2.0.5

Nov 15, 2021

This version

2.0.4

Dec 11, 2020

2.0.3

Oct 18, 2020

2.0.2

Sep 11, 2020

2.0.1

Feb 5, 2020

2.0.0

Feb 2, 2020

1.1.2

Dec 4, 2019

1.1.1

Oct 18, 2019

1.1.0

Oct 17, 2019

1.0.1

Oct 17, 2019

0.1.11

May 22, 2019

0.1.10

May 15, 2019

0.1.9

Jan 10, 2019

0.1.8

Nov 22, 2018

0.1.7

Nov 22, 2018

0.1.6

Aug 8, 2018

0.1.5

Jul 4, 2018

0.1.4

Jun 19, 2018

0.1.3

Feb 16, 2018

0.1.2

Feb 16, 2018

0.1.1

May 23, 2017

0.1.0

May 22, 2017

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