Ancestral sequence reconstruction using a tree structured Ornstein Uhlenbeck variational autoencoder
Reason this release was yanked:
old version
Project description
DRAUPNIR: "I am a very Beta version, do not use me"
##Requirements for tree inference:
IQ-Tree: http://www.iqtree.org/doc/Quickstart
conda install -c bioconda iqtree
RapidNJ: https://birc.au.dk/software/rapidnj
conda config --add channels bioconda
conda install rapidnj
##Requirements for patristic matrix construction
Install R and ape and TreeDist libraries
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
draupnir-0.0.19.tar.gz
(3.9 MB
view details)
Built Distribution
File details
Details for the file draupnir-0.0.19.tar.gz
.
File metadata
- Download URL: draupnir-0.0.19.tar.gz
- Upload date:
- Size: 3.9 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.62.3 importlib-metadata/4.10.1 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.7.11
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 60cf805de194bc66b6672c836a7fadf1c20fac6311675e9cc29ad85f047fd8ee |
|
MD5 | df33711497b55721c94d489a5e47ec74 |
|
BLAKE2b-256 | 8038d867f6ef9a30ed2db7f93bb9b9136237d6bcb84d7bb6125c212f6e22010b |
File details
Details for the file draupnir-0.0.19-py3-none-any.whl
.
File metadata
- Download URL: draupnir-0.0.19-py3-none-any.whl
- Upload date:
- Size: 4.0 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.62.3 importlib-metadata/4.10.1 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.7.11
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | b1fa3caf1f09429dee7e549b8cf84a225a1131c05d4ba1976966ab1860d7dd06 |
|
MD5 | 16be37f67a6a829b5ab3c712fe3d6fdd |
|
BLAKE2b-256 | c1dc49f4c48d6f712292c7fe89a759649c24409351110e0731106f6d1a0ba38e |