Ancestral sequence reconstruction using a tree structured Ornstein Uhlenbeck variational autoencoder
Reason this release was yanked:
old version
Project description
DRAUPNIR: "I am a very Beta version, do not use me"
##Requirements for tree inference:
IQ-Tree: http://www.iqtree.org/doc/Quickstart
conda install -c bioconda iqtree
RapidNJ: https://birc.au.dk/software/rapidnj
conda config --add channels bioconda
conda install rapidnj
##Requirements for patristic matrix construction
Install R and ape and TreeDist libraries
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
draupnir-0.0.193.tar.gz
(3.9 MB
view details)
Built Distribution
File details
Details for the file draupnir-0.0.193.tar.gz.
File metadata
- Download URL: draupnir-0.0.193.tar.gz
- Upload date:
- Size: 3.9 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.62.3 importlib-metadata/4.10.1 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.7.11
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 5c8f0e920aebbb4da193916e3c6b056b6bca7c89499f9767c01a081a7ee67df4 |
|
| MD5 | 2ced3d110d64da6448e0f899338456ab |
|
| BLAKE2b-256 | 1c759ba0ce8e786f1ffb376a90bb9785e62694bf98580ab11f6a7728c8dbf141 |
File details
Details for the file draupnir-0.0.193-py3-none-any.whl.
File metadata
- Download URL: draupnir-0.0.193-py3-none-any.whl
- Upload date:
- Size: 4.0 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.62.3 importlib-metadata/4.10.1 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.7.11
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 7484adab04d85c1df6a75bca68e217462ddee4ae55d216fe2636bd95a8b86c4d |
|
| MD5 | 9c1e1f0381ef3ba5e81d93f2ab9c364e |
|
| BLAKE2b-256 | f54a5d4a111aa1030e74d6bf38f4fb0b292e2eb0ff193aa278629967c7566fb7 |
