A Python DSL for bioinformatics pipelines
Project description
A Python DSL for pipelines
Don't Repeat Yourself (D.R.Y) while writing pipelines, and stay away from leaky abstractions, use DryPipe !
What is a pipeline ?
A pipeline could be described as "a bunch of programs feeding data to one another".
Programs within a pipeline tend to:
- run for a long time
- need large amounts of resources (cpu, memory, disk space, etc), requiring clusters to run (Slurm, Torque,etc)
- be written in different languaged, have different CLI interfaces, file formats, etc.
- long CODE->RUN->DEBUG->CODE cycles
The length of the debug cycle makes pipelines difficult to debug.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
dry_pipe-0.7.13.tar.gz
(1.4 MB
view hashes)
Built Distribution
Close
Hashes for dry_pipe-0.7.13-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | cddd8151da4a46da1168f44f420ef92aa8d3895cc19d4f1db6dfefe5ef4fe7f5 |
|
MD5 | ce01129898be8a052a9919245c7fb757 |
|
BLAKE2b-256 | 40310ffbee10023186d87cbb3fb991a6a81a5c2762107f059914fd7fe47a9b95 |