A Python DSL for bioinformatics pipelines
Project description
A Python DSL for pipelines
Don't Repeat Yourself (D.R.Y) while writing pipelines, and stay away from leaky abstractions, use DryPipe !
What is a pipeline ?
A pipeline could be described as "a bunch of programs feeding data to one another".
Programs within a pipeline tend to:
- run for a long time
- need large amounts of resources (cpu, memory, disk space, etc), requiring clusters to run (Slurm, Torque,etc)
- be written in different languaged, have different CLI interfaces, file formats, etc.
- long CODE->RUN->DEBUG->CODE cycles
The length of the development cycle makes pipelines difficult to debug.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
dry_pipe-0.7.48.tar.gz
(1.4 MB
view hashes)
Built Distribution
Close
Hashes for dry_pipe-0.7.48-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 5bc2d1899661ec88c397e66c1987ac8c4923267da7767a6fb58284ea258db32f |
|
MD5 | 142943cea4a45e344df127c458a14883 |
|
BLAKE2b-256 | 37b533075a6ffe31ad7f089335df3da1087e863d6907d88cdd004c96572ac9c1 |