ds4se 0.1.0

Data Science for Software Engieering (ds4se) is an academic initiative to perform exploratory analysis on software engieering artifact and metadata. Data Management, Analysis, and Benchmarking for DL and Traceability

ds4se

Data Science for Software Engieering (ds4se) is an academic initiative to perform exploratory analysis on software engineering artifacts and metadata. Data Management, Analysis, and Benchmarking for DL and Traceability.

pip install ds4se

Requirement already satisfied: ds4se in c:\users\admin\desktop\fall2020\software engineering\project\github desktop\ds4se (0.0.7)
Note: you may need to restart the kernel to use updated packages.


WARNING: You are using pip version 20.2.3; however, version 20.2.4 is available.
You should consider upgrading via the 'C:\Users\admin\anaconda3\python.exe -m pip install --upgrade pip' command.

This file will become your README and also the index of your documentation.

Install

pip install ds4se

How to use

import ds4se.facade as facade

Traceability

To use the ds4se library to calculate trace link value of proposed trace link with given.The function will takes in two strings for contents for source file and target file, feed two strings into a model that user specifies, and return traceability value.

Supported technique model:
    VSM
    LDA
    orthogonal 
    LSA
    JS
    word2vec
    doc2vec

The function returns a tuple of two integers, with the first element as distance between two artifacts and the second element be the similarity between two artifacts, which is the traceability value.

facade.TraceLinkValue("source_string is a string of entire content of one source file","target_string is a string of entire content of one targetfile","word2vec")

2020-10-27 23:03:35,138 : INFO : adding document #0 to Dictionary(0 unique tokens: [])
2020-10-27 23:03:35,147 : INFO : built Dictionary(1815 unique tokens: ['@return', 'Converts', 'The', 'a', 'and']...) from 153 documents (total 5769 corpus positions)
2020-10-27 23:03:35,147 : INFO : loading Word2Vec object from c:\users\admin\desktop\fall2020\software engineering\project\github desktop\ds4se\ds4se\model\[word2vec-Java-Py-SK-500-20E-128k-1594873397.267055].model
2020-10-27 23:03:35,263 : INFO : loading wv recursively from c:\users\admin\desktop\fall2020\software engineering\project\github desktop\ds4se\ds4se\model\[word2vec-Java-Py-SK-500-20E-128k-1594873397.267055].model.wv.* with mmap=None
2020-10-27 23:03:35,265 : INFO : loading vectors from c:\users\admin\desktop\fall2020\software engineering\project\github desktop\ds4se\ds4se\model\[word2vec-Java-Py-SK-500-20E-128k-1594873397.267055].model.wv.vectors.npy with mmap=None
2020-10-27 23:03:35,295 : INFO : setting ignored attribute vectors_norm to None
2020-10-27 23:03:35,296 : INFO : loading vocabulary recursively from c:\users\admin\desktop\fall2020\software engineering\project\github desktop\ds4se\ds4se\model\[word2vec-Java-Py-SK-500-20E-128k-1594873397.267055].model.vocabulary.* with mmap=None
2020-10-27 23:03:35,298 : INFO : loading trainables recursively from c:\users\admin\desktop\fall2020\software engineering\project\github desktop\ds4se\ds4se\model\[word2vec-Java-Py-SK-500-20E-128k-1594873397.267055].model.trainables.* with mmap=None
2020-10-27 23:03:35,299 : INFO : loading syn1neg from c:\users\admin\desktop\fall2020\software engineering\project\github desktop\ds4se\ds4se\model\[word2vec-Java-Py-SK-500-20E-128k-1594873397.267055].model.trainables.syn1neg.npy with mmap=None
2020-10-27 23:03:35,330 : INFO : setting ignored attribute cum_table to None
2020-10-27 23:03:35,331 : INFO : loaded c:\users\admin\desktop\fall2020\software engineering\project\github desktop\ds4se\ds4se\model\[word2vec-Java-Py-SK-500-20E-128k-1594873397.267055].model
2020-10-27 23:03:35,402 : INFO : precomputing L2-norms of word weight vectors
2020-10-27 23:03:35,454 : INFO : constructing a sparse term similarity matrix using <gensim.models.keyedvectors.WordEmbeddingSimilarityIndex object at 0x000001C608E797F0>
2020-10-27 23:03:35,455 : INFO : iterating over columns in dictionary order
2020-10-27 23:03:35,460 : INFO : PROGRESS: at 0.06% columns (1 / 1815, 0.055096% density, 0.055096% projected density)
2020-10-27 23:03:37,412 : INFO : PROGRESS: at 55.15% columns (1001 / 1815, 0.347548% density, 0.585365% projected density)
2020-10-27 23:03:38,271 : INFO : constructed a sparse term similarity matrix with 0.418460% density
2020-10-27 23:03:38,290 : INFO : Removed 1 and 2 OOV words from document 1 and 2 (respectively).
2020-10-27 23:03:38,292 : INFO : adding document #0 to Dictionary(0 unique tokens: [])
2020-10-27 23:03:38,293 : INFO : built Dictionary(9 unique tokens: ['a', 'content', 'entire', 'file', 'is']...) from 2 documents (total 18 corpus positions)
2020-10-27 23:03:38,305 : INFO : Computed distances or similarities ('source', 'target')[[0.25430019797963815, 0.7972573085858937]]





(0.25430019797963815, 0.7972573085858937)

word2vec_metric is an optional parameter when using word2vec as technique, available metrics are:
WMD
SCM

Analysis

This is the data analysis part of ds4se library, users can use the library to conduct analysis on artifacts with information theory and statistical analysis

For all functions in analysis part, input should be pandas dataframe with following structure

d = {'contents': ["hello world", "this is a content of another file"]}
df = pd.DataFrame(data=d)
print(df)

                            contents
0                        hello world
1  this is a content of another file

Usage of ds4se model to calculate the number of documents of either source or target class

The method can process dataframes for artifacts contents and return the number of documents each artifacts class contains. 
It takes in two parameters, a pandas dataframe for source artifacts and a pandas data frame for target artifacts, and it will do calculation for both classes.

The method returns a list of 4 integers:
1: number of documents for source artifacts;
2: number of documents for target artifacts;
3: source difference (difference between previous two results);
4: target difference (same as above, but opposite sign).

result = facade.NumDoc("source","target")
source_doc = result[0]
target_doc = result[1]
difference_source = result[2]
difference_target = result[3]
print("The number of documents for source is {} , with {} source difference".format(source_doc, difference_source))
print("The number of documents for target is {} , with {} target difference".format(target_doc, difference_target))

The number of documents for source is 160 , with 32 source difference
The number of documents for target is 128 , with -32 target difference

Usage of ds4se model to calculate the vocabulary size of either source or target class

The method can process dataframes for artifacts contents and return the total number of vocab contained in each artifact class. 
The method takes in two parameters, source artifacts and target artifacts, and it will do calculation for both classes.

The method returns a list of 4 integers:
1: vocabulary size for source artifacts;
2: vocabulary size for target artifacts;
3: source difference;
4: target difference.

vocab_result = facade.VocabSize(source_df, target_df)
source = vocab_result[0]
target = vocab_result[1]
difference_source = vocab_result[2]
difference_target = vocab_result[3]
print("The vocabulary size for source is {} , with {} target difference".format(source, difference_source))
print("The vocabulary size for target is {} , with {} target difference".format(target, difference_target))

---------------------------------------------------------------------------

NameError                                 Traceback (most recent call last)

<ipython-input-17-0a0a1023f2fc> in <module>
----> 1 vocab_result = facade.VocabSize(source_df, target_df)
      2 source = vocab_result[0]
      3 target = vocab_result[1]
      4 difference_source = vocab_result[2]
      5 difference_target = vocab_result[3]


NameError: name 'source_df' is not defined

Usage of ds4se model to calculate the average number of token of either source or target class

The method can process dataframes for artifacts contents and return the average number of tokens in each artifact class. 
It does calculation by first finding the total number of token for each artifact class, and then divide each of them by the number of documents present in each artifacts.
The method takes in two parameters, source artifacts and target artifacts, and it will do calculation for both classes.

The method returns a list of 4 integers:
1: average number of token for source artifacts;
2: average number of token for target artifacts;
3: source difference;
4: target difference.

token_result = facade.AverageToken(source_df, target_df)
source = token_result[0]
target = token_result[1]
difference_source = vocab_result[2]
difference_target = vocab_result[3]
print("The number of average token for source is {} , with {} source difference".format(source, difference_source))
print("The number of average token for target is {} , with {} target difference".format(target, difference_target))

The number of average token for source is 107 , with 35 source difference
The number of average token for target is 143 , with -35 target difference

Usage of ds4se model to retriev term frequency

The method can process dataframes for artifacts contents and return the top three most frequent terms that appears in artifact class. It employs bpe model to precess the contents in each dataframe

The method takes in two parameters, 
1: source artifacts,
2: target artifacts, 
and it will do calculation for both classes.

The method returns a dictonary with 
key: token
value: a list of count and frequency

facade.VocabShared(source_df,target_df)

{'est': [160, 0.16], 'http': [136, 0.136], 'frequnecy': [124, 0.124]}

If user only need the term frequency of one of two classes, they can choose to use Vocab() function, which is exactly the same except Vocab only processes one dataframe for one artifact class

facade.Vocab(artifacts_df)

{'est': [141, 0.141], 'http': [136, 0.136], 'frequnecy': [156, 0.156]}

For Shared Metrics

Using the following metrics to compute using both source and target artifacts, use the following funtions.

They all require two parameters: source and target artifacts.

And return one integer value

Shared vocabulary size

facade.SharedVocabSize(source_df, target_df)

112

Mutual information

facade.MutualInformation(source_df, target_df)

127

Corss Entropy

facade.CrossEntropy(source_df, target_df)

171

KL Divergence

facade.KLDivergence(source_df, target_df)

152