dwclib 2024.9.17

Python wrapper to DataWarehouse Connect

Overview

Python wrapper to DataWarehouse Connect.

• Free software: ISC license

Installation

conda install -c conda-forge dwclib

pip install dwclib

Installation through conda greatly simplifies dependency management.

Additionally, Microsoft SQL Server drivers are needed and will need to be installed seperately. See here for more information: https://github.com/mkleehammer/pyodbc/wiki

Changelog

• 2024.5.10

  • Support searching patients directly in DWC without DWCmeta

• 2024.4.4

  • Support querying enumerations
  • Update dependencies

• 2023.6.21

  • Remove all occurences of naive datetime since dask now support tz-aware
  • New config file syntax to be compatible with other libraries
  • Fix a bug when Pleth waveform return all NaN

• 2023.6.7

  • Support for querying alerts using the read_alerts call
  • Use the platformdirs package for config file location

• 2022.9.14

  • Support numeric labels and sublabels in read_patients and read_numerics
  • Support to query for multiple patients at once in read_numerics

• 2022.6.23

  • Convert packaging from flit to poetry
  • Add linting and testing with nox, flake8 and safety
  • Create scaffolding for future Sphinx documentation
  • Fix a number of bugs in corner cases (division by zero, ...)
  • Add a generic Dask wrapper to run custom DWC queries with Dask

• 2022.3.22

  • Convert packaging from old-style setup.py to flit
  • Refactor: extract common code between dask and pandas version
  • No longer relies on user defined function in the database
  • Patients: add read_patient function to fetch a single patient
  • Numerics: read_numerics patientids can be a list or a str. When it is a list, a MultiIndex is returned