Skip to main content

A python package that implements dynamic bayesian networks models on time series data

Project description

dyban

This package is intended to be used for Network Reconstruction of Dynamic Bayesian Networks.

To test the algorithm on the Yeast data set run the bash script. Example to run a Non-Homogeneous Dynamic Bayesian Network

  sh yeast_pipeline.sh -m nh-dbn

Where -m denotes the method to use

  • 'h-dbn' -> Homogeneous Dynamic Bayesian Network
  • 'nh-dbn' -> Non-Homonegeneous Dynamic Bayesian Network
  • 'seq-dbn' -> Sequentially Coupled Dynamic Bayesian Network
  • 'glob-dbn' -> Globally Coupled Dynamic Bayesian Network

This will be the readme of the package. Github-flavored Markdown for reference.

  • Run this command to install the package locally
  pip install .

Or

  pip install -e .

To be able to edit the source code and (hot-reload) updates?

To run the python profiler use the bash script:

  sh algorithm_profiling.sh

In order to be able to see the profiler results you need to have 'kcachegrind'

   sudo apt-get install -y kcachegrind 

Project details


Release history Release notifications | RSS feed

This version

0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

dyban-0.1.tar.gz (31.5 kB view hashes)

Uploaded source

Built Distribution

dyban-0.1-py3-none-any.whl (45.9 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page