Skip to main content

A python package that implements dynamic bayesian networks models on time series data

Project description

dyban

This package is intended to be used for Network Reconstruction of Dynamic Bayesian Networks.

To test the algorithm on the Yeast data set run the bash script. Example to run a Non-Homogeneous Dynamic Bayesian Network

  sh yeast_pipeline.sh -m nh-dbn

Where -m denotes the method to use

  • 'h-dbn' -> Homogeneous Dynamic Bayesian Network
  • 'nh-dbn' -> Non-Homonegeneous Dynamic Bayesian Network
  • 'seq-dbn' -> Sequentially Coupled Dynamic Bayesian Network
  • 'glob-dbn' -> Globally Coupled Dynamic Bayesian Network

This will be the readme of the package. Github-flavored Markdown for reference.

  • Run this command to install the package locally
  pip install .

Or

  pip install -e .

To be able to edit the source code and (hot-reload) updates?

To run the python profiler use the bash script:

  sh algorithm_profiling.sh

In order to be able to see the profiler results you need to have 'kcachegrind'

   sudo apt-get install -y kcachegrind 

Project details


Release history Release notifications

This version

0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for dyban, version 0.1
Filename, size File type Python version Upload date Hashes
Filename, size dyban-0.1-py3-none-any.whl (45.9 kB) File type Wheel Python version py3 Upload date Hashes View hashes
Filename, size dyban-0.1.tar.gz (31.5 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page