DynamicGut: Host-microbiome metabolic interactions
Project description
Please use the cobrapy Google Group for help. Alternatively, you can use gitter.im for quick questions and discussions (faster response times).
More information about opencobra is available at the website.
Installation
Use pip to install DynamicGut from PyPI (we recommend doing this inside a virtual environment):
pip install dynamicgut
Direct installation in virtual environment
If virtualenvwrapper is not installed, follow the directions to install virtualenvwrapper.
Run examples in a notebook
An example of how to use DynamicGut is provided in a notebook. Here’s how to start Jupyter and run the notebook from the virtualenv.
References
cobrapy doi:10.1186/1752-0509-7-74
ModelSEED doi:10.1038/nbt.1672
PATRIC doi:10.1093/nar/gkt1099
