A Python implementation for Dynamic Network Analysis.
Project description
Dynamic Network Analysis (dynetan)
Python implementation of Dynamical Network Analysis.
Installing with pip
To install this package and all required Python packages, simply run:
pip install dynetan
Requirements
The core package requires Python 3.7 or greater and the follwoing python packages:
- MDAnalysis
- SciPy
- NumPy
- pandas
- networkx
- numba
- h5py
- python-louvain
The following packages are not necessary for the core fucntionalyty, but are suggested:
- ipywidgets
- colorama
- nglview
- rpy2
- pympler
- tzlocal
Build the package from source:
Ensure pip, setuptools, and wheel are up to date:
python -m pip install --upgrade pip setuptools wheel
Create a Wheel file locally:
python3 setup.py sdist bdist_wheel
Troubleshooting
Installing with pip
-
If during the installation process with
pip
you find the errorfatal error: Python.h: No such file or directory
, make sure your Linux distribution has the necessary development packages for Python. They contain header files that are needed for the compilation of packages such as MDAnalysis. These packages will be listed as "python3-dev" or similar. For example, in Fedora 32, one can use the commanddnf install python3-devel
to install additional system packages with Python headers. -
Similarly, if during the installation process you find the error
gcc: fatal error: cannot execute ‘cc1plus’: execvp: No such file or directory
, make sure you have development tools for gcc and c++. For example, in Fedora 32, one can use the commanddnf install gcc-c++
to install additional system packages with c++ development tools.
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