a project management tool for reproducible, portable, and streamlined bioinformatics analysis
Project description
eXtra
eXtra is a project management tool specifically designed for bioinformatics projects. It enables reproducible analysis of large datasets, making it effortless to share and collaborate with others.
Features
- A human-readable configuration file
- Git integration
- Guaranteed reproducibility and portability
- Managing data, containers, and workflows, all in one place
Installation
The easiest way to install eXtra is to use pip:
pip install eXtra-cli
Quickstart
To get started with eXtra, use the eXtra init
command to create a new project:
eXtra init my_project # This will by default create a Git repository
cd my_project
To add a new dataset to your project, use the eXtra add
command:
eXtra add SRP123456 # ENCSR123ABC, GSE123456, etc. are also supported
You can also add privately hosted datasets:
eXtra add me@some_host:path/to/my_dataset ftp://ftp.example.com/another_dataset
If you share your project with others, they can easily retrieve the datasets you added:
eXtra install
For more information, please refer to examples.
License
This project is licensed under the MIT license. See LICENSE for details.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for extra_cli-0.2.0-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | a75af0a4a8fc5e86ada504cc939a0497386f1b1c59275bb977647379c999b791 |
|
MD5 | cca4c07aa20be75026518ac8250886b9 |
|
BLAKE2b-256 | 86be0384613423fa379c57a25ca9a09424f8c48b10426dda1df91c51bf0e1ca1 |