Prime editor gRNA design tool
Project description
[![Version][version-shield]][version-url] [![Python versions][python-shield]][python-url] [![Platforms][platform-shield]][python-url]
Easy-Prime: an optimized prime editor gRNA design tool based on gradient boosting trees
Easy-Prime provides optimized pegRNA and ngRNA combinations efficient Prime editing design.
Summary
Dependency:
- bedtools
- RNAfold https://anaconda.org/bioconda/viennarna
Installation
The most easiest way to install change-seq pipeline is via conda.
Input
Searching parameters for PE design
Output
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
easy_prime-1.1.tar.gz
(16.1 kB
view details)
Built Distribution
easy_prime-1.1-py3-none-any.whl
(31.3 kB
view details)
File details
Details for the file easy_prime-1.1.tar.gz
.
File metadata
- Download URL: easy_prime-1.1.tar.gz
- Upload date:
- Size: 16.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.3
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | f1eec3092904c4ced2b0729101220622eafc7879e27a3c0d81ceadcf4aa3e31f |
|
MD5 | b91729e90b68490ff30cb416db050e21 |
|
BLAKE2b-256 | e5e331bd6a3c0d66948e72403bc8e534bf97f9f188264e87a5204de75b18e49c |
File details
Details for the file easy_prime-1.1-py3-none-any.whl
.
File metadata
- Download URL: easy_prime-1.1-py3-none-any.whl
- Upload date:
- Size: 31.3 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.3
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | b6783c774f4f395fd67b7917311ce303f4b848e82693d18f26ba2628e62e33ba |
|
MD5 | 227b9109e0c99f225e0d1b204df227a4 |
|
BLAKE2b-256 | 4c99e48ae32796f25eb301fe0bb1d6b2ea20534c53c63e1d3cbdf64ea40dc233 |